Author

Juan L. Trincado

Josep Carreras Leukaemia Research InstituteORCID 0000-0001-5363-3774Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Cancer Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 4 Assay:bulk RNA-seq· 3 Organism:human· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Eduardo EyrasiD· 3 shared Aina RilliD· 1 shared Alberto ÓrfãoiD· 1 shared Alejandro Martín García-Sancho· 1 shared Álex BatalleriD· 1 shared Álvaro Urbano-IspizúaiD· 1 shared Amadis Pages· 1 shared Babita SinghiD· 1 shared

Activity by Year

2016-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Eduardo EyrasORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

ImmunologyCell Reports MedicinePeer-reviewedOct 28, 2024

Integrative single-cell multi-omics of CD19CARpos and CARneg T cells suggest drivers of immunotherapy response in B-cell neoplasias

Mercedes Guerrero-Murillo, Aina Rill, Juan L. Trincado…·Pablo R. Menéndez

This study integrates single-cell multi-omics data from CAR-T cells to identify factors influencing immunotherapy response in B-cell neoplasias.

15 citations

𝕏 PostBluesky

BioinformaticsPLoS Computational BiologyPeer-reviewedSep 16, 2021

ISOTOPE: ISOform-guided prediction of epiTOPEs in cancer

Juan L. Trincado, Marina Reixachs‐Solé, Judith Pérez‐Granado…·Eduardo Eyras

ISOTOPE identifies tumor-specific splicing-derived epitopes using RNA sequencing and mass spectrometry, showing splicing neoepitopes have higher MHC-I binding affinity in immune responders.

8 citations

humanbulk RNA-seq

𝕏 PostBluesky

BioinformaticsGenome biologyPeer-reviewedMar 23, 2018

SUPPA2 provides fast, accurate, and uncertainty-aware differential splicing analysis across multiple conditions

Juan L. Trincado, Juan Carlos Entizne, Gerald Hysenaj…·Eduardo Eyras

707 citationstop 1%

bulk RNA-seqstatistical model

𝕏 PostBluesky

Cancer BiologyGenome MedicinePeer-reviewedAug 17, 2016

The prognostic potential of alternative transcript isoforms across human tumors

Juan L. Trincado, Endre Sebestyen, Amadis Pages, Eduardo Eyras

The paper analyzes transcript isoform abundance across 12 tumors to build prognostic signatures, finding they predict tumor stage and survival better than gene expression signatures.

DOI 10.1186/s13073-016-0339-3

humanbulk RNA-seq

𝕏 PostBluesky