James A. Fellows Yates

This study analyzes the oral microbiome of King Richard III using dental calculus metagenomics, finding it similar to other northern European populations despite his royal status and diet.

The paper adds standardized radiocarbon dating information to the AncientMetagenomeDir dataset, highlighting inconsistencies in radiocarbon reporting across ancient metagenomic studies.

The paper introduces a scalable pipeline for grouping protein sequences into families, showing it matches curated databases and scales linearly with input size.

This paper discusses the adoption of Nextflow and nf-core frameworks to standardize bioinformatics pipelines, improving collaboration and interoperability across research communities.

The paper introduces nf-core/taxprofiler, a pipeline for automated metagenomic taxonomic classification and profiling using multiple tools and databases.

The paper introduces nf-core/eager, a Nextflow pipeline for ancient genome reconstruction, focusing on accessibility, reproducibility, and adaptability to modern practices.

The paper curates and standardizes metadata for ancient metagenomic samples to improve data retrieval and interoperability.