Abhinav Kaushik

This study examines changes in the H3K27me3 epigenetic mark in Theileria annulata-transformed macrophages during attenuation, finding increased global H3K27me3 levels and broader genomic distribution without major transcriptional changes.

The paper analyzes the pangenome of Rhizoctonia solani isolates and develops a database, RsolaniDB, to facilitate research on its genetic diversity and pathogenicity.

The paper sequences the genome of Plasmodium simium to study its evolutionary history and identify genetic adaptations enabling host-switching to humans.

CyAnno improves cell type annotation in mass cytometry by incorporating unlabeled cells, enhancing prediction accuracy for gated cell types.

The paper shows that malaria parasites' intraerythrocytic cycle duration is influenced by coordination with host circadian rhythms, with gene expression and pathways affected when this coordination is disrupted.

The paper identifies GZMA and RASGRP1 as tumor suppressors in Theileria-transformed bovine macrophages and human B-lymphoma cells through transcriptomic and functional analyses.

ApicoTFdb is a database of transcription factors and regulators in apicomplexan species, including experimentally validated and computationally predicted TFs and TAFs across 14 species.