Author

Yuchen Qiu

Northeastern UniversityORCID 0000-0001-6047-7204Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Organism:human· 1 Assay:long-read sequencing· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Keqing NianiD· 2 shared Sara H. RouhanifardiD· 2 shared Amr K. MakhamrehiD· 1 shared Caroline A. McCormickiD· 1 shared Dylan BlochiD· 1 shared Howard GamperiD· 1 shared Meni WanunuiD· 1 shared Michele MeseonznikiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Keqing NianORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

NuclampFISH enables cell sorting based on nuclear RNA expression for chromatin analysis

Yifang Liu, Yuchen Qiu, Keqing Nian, Sara H. Rouhanifard

NuclampFISH enables cell sorting based on nuclear RNA expression for chromatin analysis by using reversible crosslinkers and amplified FISH signals.

BMC Genomics · Jul 1, 2025Peer-reviewedGenomics

Probing enzyme-dependent pseudouridylation using direct RNA sequencing to assess neuronal epitranscriptome plasticity

Oleksandra Fanari, Sepideh Tavakoli, Yuchen Qiu, Amr K. Makhamreh, Keqing Nian, Stuart Akeson, Michele Meseonznik, Caroline A. McCormick, Dylan Bloch, Howard Gamper, Miten Jain, Ya‐Ming Hou, Meni Wanunu, Sara H. Rouhanifard

This study uses direct RNA sequencing to examine pseudouridylation dynamics in neurons under healthy and unhealthy conditions, finding changes in psi writer expression and site occupancy.

bioRxiv · Mar 26, 2024 · PreprintGenomics