Author

Ann‐Marie Patch

QIMR Berghofer Medical Research InstituteORCID 0000-0001-6121-4019Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 4 Approach:statistical model· 4 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Assay:DNA methylation· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Stephen H. KazakoffiD· 3 shared Barbara LeggettiD· 2 shared Catherine BondiD· 2 shared Diane McKeone· 2 shared Günter HärteliD· 2 shared John V. PearsoniD· 2 shared Kátia NonesiD· 2 shared Lochlan FennelliD· 2 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersGenomics

Stephen H. KazakoffORCID

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4 papers

Recent·Most cited

GenomicsbioRxivPreprintMar 7, 2022

Comparative analysis of the Illumina Mouse Methylation BeadChip and Reduced Representation Bisulphite Sequencing for routine DNA methylation analysis of murine samples

Lochlan Fennell, Günter Härtel, Diane McKeone…·Vicki Whitehall

The paper compares DNA methylation analysis using the Mouse Methylation BeadChip and reduced representation bisulphite sequencing in murine colorectal carcinogenesis models, showing similar differential methylation detection with different coverage efficiencies.

DOI 10.1101/2022.03.07.483250

mouseDNA methylation

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GenomicsGenome MedicinePeer-reviewedJan 10, 2022

Genomic analysis of patient-derived xenograft models reveals intra-tumor heterogeneity in endometrial cancer and can predict tumor growth inhibition with talazoparib

Vanessa Bonazzi, Olga Kondrashova, Deborah S. Smith…·Pamela M. Pollock

The paper develops endometrial cancer PDX models that capture tumor heterogeneity and predict response to talazoparib.

35 citationstop 2%

humanwhole-exome sequencing

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Systems BiologyPLoS PathogensPeer-reviewedJan 13, 2021

Systems vaccinology analysis of a recombinant vaccinia-based vector reveals diverse innate immune signatures at the injection site

Jessamine E. Hazlewood, Troy D. Dumenil, Thuy T. Le…·Andreas Suhrbier

The paper analyzes the innate immune response at injection sites after vaccination with a recombinant vaccinia vector, identifying immune signatures and gene expression patterns.

16 citations

humanbulk RNA-seq

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GenomicsCellular and Molecular Gastroenterology and HepatologyPeer-reviewedJan 1, 2019

Genome Scale Epigenetic Profiling Reveals Five Distinct Subtypes of Colorectal Cancer

Lochlan Fennell, Troy D. Dumenil, Leesa F. Wockner…·Vicki Whitehall

The paper identifies five distinct subtypes of colorectal cancer using DNA methylation profiling and links them to specific mutations and gene body methylation patterns.

54 citationstop 3%

humanDNA methylation

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