Author

Vicki Whitehall

The University of QueenslandORCID 0000-0002-8285-2391Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:DNA methylation· 2 Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

Ann‐Marie PatchiD· 2 shared Barbara LeggettiD· 2 shared Catherine BondiD· 2 shared Diane McKeone· 2 shared Günter HärteliD· 2 shared Lochlan FennelliD· 2 shared Alexandra M. KaneiD· 1 shared Andrew John MallettiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Ann‐Marie PatchORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Unraveling lncRNA Diversity at a Single Cell Resolution and in a Spatial Context across Different Cancer Types

P. Prakrithi, Tuan Vo, Zherui Xiong, Hani Vu, Loan T Nguyen, Andrew Newman, Julie Wilhelmey, Vicki Whitehall, Jazmina L. Gonzalez Cruz, Simon Wood, Andrew John Mallett, Ishaan Gupta, Quan Hoang Nguyen

The paper identifies 354,937 novel lncRNAs across 13 cancer types using single-cell and spatial transcriptomics, revealing their cell-type specificity, spatial distribution, and potential functional roles.

Nature Methods · May 14, 2026Peer-reviewedCancer Biology

Comparative analysis of the Illumina Mouse Methylation BeadChip and Reduced Representation Bisulphite Sequencing for routine DNA methylation analysis of murine samples

Lochlan Fennell, Günter Härtel, Diane McKeone, Catherine Bond, Alexandra M. Kane, Barbara Leggett, Ann‐Marie Patch, Vicki Whitehall

The paper compares DNA methylation analysis using the Mouse Methylation BeadChip and reduced representation bisulphite sequencing in murine colorectal carcinogenesis models, showing similar differential methylation detection with different coverage efficiencies.

bioRxiv · Mar 7, 2022 · PreprintGenomics

Genome Scale Epigenetic Profiling Reveals Five Distinct Subtypes of Colorectal Cancer

Lochlan Fennell, Troy D. Dumenil, Leesa F. Wockner, Günter Härtel, Kátia Nones, Catherine Bond, Jennifer Borowsky, Cheng Liu, Diane McKeone, Lisa M. Bowdler, Grant W. Montgomery, Kerenaftali Klein, Isabell Hoffmann, Ann‐Marie Patch, Stephen H. Kazakoff, , Vicki Whitehall

The paper identifies five distinct subtypes of colorectal cancer using DNA methylation profiling and links them to specific mutations and gene body methylation patterns.

Cellular and Molecular Gastroenterology and Hepatology · Jan 1, 2019Peer-reviewedGenomics