Author

Lynn Ly

Oxford Nanopore Technologies (United Kingdom)ORCID 0000-0001-6321-8996Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:database / resource· 1 Approach:deep learning· 1

Frequent Co-Authors

Jacob West-Roberts· 2 shared Jillian F. BanfieldiD· 2 shared John BeaulaurieriD· 2 shared Luis E. Valentin-AlvaradoiD· 2 shared Rohan SachdevaiD· 2 shared Scott Hickey· 2 shared Akash Sookdeo· 1 shared Alex W. DrongiD· 1 shared

Activity by Year

2023-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersMicrobiology

Jacob West-Roberts

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

ImmunologybioRxivPreprintMar 26, 2024

De novo antibody discovery in human blood from full-length single B cell transcriptomics and matching haplotyped-resolved germline assemblies

John Beaulaurier, Lynn Ly, J. Andrew Duty…·Benhur Lee

This study uses single-cell transcriptomics and germline haplotype assembly to discover antibodies from human blood post-MMR vaccination, showing neutralization of measles virus.

3 citations

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 29, 2024

CZ ID: a cloud-based, no-code platform enabling advanced long read metagenomic analysis

Sara E. Simmonds, Lynn Ly, John Beaulaurier…·Katrina Kalantar

CZ ID introduces a long-read metagenomic analysis pipeline, benchmarked against Kraken2, for virus detection and antimicrobial resistance gene identification.

29 citations

metagenomicsexperimental assay

𝕏 PostBluesky

MicrobiologybioRxivPreprintNov 21, 2023

Giant genes are rare but implicated in cell wall degradation by predatory bacteria

Jacob West-Roberts, L. E. Valentin Alvarado, Susan Mullen…·Jillian F. Banfield

The paper identifies giant genes in predatory bacteria, showing they are associated with prey adhesion and cell wall degradation.

DOI 10.1101/2023.11.21.568195

bacteria (other)proteomics

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MicrobiologybioRxivNov 21, 2023

Asgard archaea modulate potential methanogenesis substrates in wetland soil

Luis E. Valentin-Alvarado, Kathryn E. Appler, Valerie De Anda…·Jillian F. Banfield

The paper reconstructs genomes of soil-associated Asgard archaea and uses metatranscriptomics to show their role in carbon compound metabolism relevant to methane production in wetlands.

DOI 10.1038/s41467-024-49872-z

metagenomicsexperimental assay

𝕏 PostBluesky