Author

Katherine A. Alexander

Cold Spring Harbor LaboratoryORCID 0000-0001-6418-6615Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:gene regulatory network inference· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Shelley L. BergeriD· 3 shared Charly Ryan GoodiD· 2 shared Christine L. FaunceiD· 2 shared Ruofan YuiD· 2 shared Abhisha Sawant DessaiiD· 1 shared Allison N. Catizone· 1 shared Amal Oubarri· 1 shared Amina Khasanova· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBiochemistry

Shelley L. BergerORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BiochemistrybioRxivPreprintOct 23, 2026

Expanding the HIF-2α proteomic interactome with TurboID proximity labeling.

Christine L. Faunce, Amina Khasanova, Ruofan Yu…·Shelley L. Berger

This study expands the HIF-2α proteomic interactome using TurboID proximity labeling, identifying 329 novel interactors and linking some to poor patient survival in breast cancer.

DOI 10.64898/2026.10.22.760981

humanproteomics

𝕏 PostBluesky

GeneticsbioRxivPreprintOct 1, 2025

SWING regions prime chromatin for nuclear speckle mediated gene regulation

Ruofan Yu, Hanna Sas‐Nowosielska, Abhisha Sawant Dessai…·Shelley L. Berger

The paper identifies SWING regions as chromatin domains that mediate gene regulation through interactions with nuclear speckles and the lamina, showing their role in development and disease.

DOI 10.1101/2025.10.01.679801

humanChIP-seq

𝕏 PostBluesky

GenomicsCell CyclePeer-reviewedApr 9, 2019

Comparison of genotoxic vs. non-genotoxic stabilization of p53 provides insight into parallel stress-responsive transcriptional networks

Allison N. Catizone, Charly Ryan Good, Katherine A. Alexander…·Morgan A. Sammons

The paper compares genotoxic and non-genotoxic p53 activation in human fibroblasts, showing similar genome-wide binding and chromatin changes but distinct inflammatory gene expression patterns.

11 citations

humanbulk RNA-seq

𝕏 PostBluesky