Author

Cassandra Thanh

University of California, San FranciscoORCID 0000-0001-6458-3469Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 1 Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:host-pathogen & immune response· 1 Assay:proteomics· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Steven G. DeeksiD· 3 shared Timothy J. HenrichiD· 3 shared Christopher D. Pilcher· 2 shared Claire LevyiD· 2 shared David A. SiegeliD· 2 shared Erica A. GibsoniD· 2 shared Florian HladikiD· 2 shared Frederick M. HechtiD· 2 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersImmunology

Steven G. DeeksORCID

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3 papers

Recent·Most cited

ImmunologyThe Journal of Infectious DiseasesPeer-reviewedJul 8, 2025

Inflammatory Monocytes Increase Prior to Detectable HIV-1 Rebound Viremia

Anna Farrell-Sherman, Natalia de la Force, Cecilia A. Prator…·Lillian B. Cohn

The paper identifies increased CD16++ monocytes with anti-viral gene expression before HIV-1 rebound, suggesting early immune signals of viral resurgence.

5 citations

humanbulk RNA-seq

𝕏 PostBluesky

GeneticsbioRxivPreprintJan 10, 2023

Differences in expression of tumor suppressor, innate immune, inflammasome, and potassium/gap junction channel host genes significantly predict viral reservoir size during treated HIV infection

Ashok K. Dwivedi, David A. Siegel, Cassandra Thanh…·Sulggi A. Lee

This study identifies host gene expression patterns associated with HIV reservoir size in treated individuals, linking inflammation, innate immunity, and potassium/gap junction channels to viral persistence.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintOct 31, 2021

Host Variation in Type I Interferon Signaling Genes (MX1), CCR5{triangleup}32, and MHC Class I Alleles in Treated HIV+ Non-Controllers Predict Viral Reservoir Size

David A. Siegel, Cassandra Thanh, Eunice Wan…·Sulggi A. Lee

The paper investigates host genetic variations in MX1, CCR5Δ32, and MHC class I alleles in HIV+ non-controllers on ART and finds associations with HIV reservoir size.

2 citations

humanwhole-exome sequencing

𝕏 PostBluesky