Łukasz Kreft

TRAPID 2.0 processes de novo transcriptomes to provide taxonomic and functional annotations, enabling gene space analysis and evolutionary studies.

AutoSpill calculates spillover coefficients for high-parameter flow cytometry data using automated gating and iterative refinement, improving compensation without requiring manual tuning or well-defined controls.

This study creates a single-cell transcriptome catalogue of the Drosophila brain across its lifespan, revealing regulatory erosion and identifying novel neuronal states linked to ageing.

PhyD3 extends the PhyloXML standard for functional genomics data visualization and provides an open-source web tool for advanced phylogenetic tree display.