Author

Maria K. Koshkina

InsermORCID 0000-0003-2282-2518Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Cancer Biology· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Assay:proteomics· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1

Frequent Co-Authors

Joshua J. WaterfalliD· 3 shared Ana Inés LalanneiD· 2 shared Erkan NarmanliiD· 2 shared Jill PiletiD· 2 shared Karine Laud-DuvaliD· 2 shared Olivier DelattreiD· 2 shared Olivier J LantziD· 2 shared Sandrine GrossetêteiD· 2 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersCancer Biology

Joshua J. WaterfallORCID

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3 papers

Recent·Most cited

Cancer BiologybioRxivPreprintSep 17, 2026

Oncogenic fusions induce an extensive cancer-restricted cryptic proteome in Ewing sarcoma

Luuk A. Broeils, Jill Pilet, Maria K. Koshkina…·Sebastiaan van Heesch

The paper shows EWSR1::FLI1 fusion drives the production of cancer-specific neoproteins in Ewing sarcoma, revealing a reversible dark proteome with therapeutic potential.

DOI 10.64898/2026.09.16.751792

humanscRNA-seq

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BioinformaticsbioRxivPreprintSep 3, 2026

An alignment-last approach enables rapid transcriptomic biomarker discovery in large cohorts

Erkan Narmanli, Alexandre Lanau, Mara Neacsu…·Joshua J. Waterfall

This paper introduces an alignment-last approach to transcriptomic analysis, enabling rapid biomarker discovery by using reads directly and revealing new transposable-element signatures and prognostic reads in cancer.

1 citation

humanbulk RNA-seq

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ImmunologybioRxivPreprintJun 25, 2026

Specific killing of Ewing sarcoma by TCR-T cells targeting public neogene-encoded antigens

Ana Inés Lalanne, Céline Collin, Floriane Petit…·Olivier Delattre

The paper demonstrates that TCR-T cells targeting neogene-encoded antigens can specifically kill Ewing sarcoma cells in vitro and in vivo.

1 citation

humanproteomics

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