Author

Ilya A Pletenev

Skolkovo Institute of Science and TechnologyORCID 0000-0001-7009-3204Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 4 Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Organism:human· 3 Research Focus:spatial domain detection· 3 Assay:ChIP-seq· 2 Approach:experimental assay· 2 Assay:Hi-C· 2

Frequent Co-Authors

Ekaterina E. KhrameevaiD· 4 shared Sergey V. RaziniD· 4 shared Sergey V. UlianoviD· 4 shared Anna V. TvorogovaiD· 3 shared Olga EfimovaiD· 3 shared Philipp KhaitovichiD· 3 shared Alexander V. CherkasoviD· 2 shared Anna D. KononkovaiD· 2 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersGenomics

Ekaterina E. KhrameevaORCID

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4 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 28, 2026

Accelerated Aging Signatures in 3D Genome Organization and Transcriptome in Schizophrenia

Kirill A. Ulianov, Diana Zagirova, Anna D. Kononkova…·Ekaterina E. Khrameeva

This study identifies accelerated aging patterns in 3D genome organization and transcriptome in schizophrenia using Hi-C data and transcriptomic analysis.

DOI 10.64898/2026.05.25.727571

humanHi-C

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GenomicsbioRxivPreprintNov 5, 2025

Ultra-long-range Polycomb-coupled interactions underlie subtype identity of human cortical neurons

Ilya A Pletenev, Nikita Vaulin, Maria N. Molodova…·Ekaterina E. Khrameeva

The paper investigates how Polycomb proteins regulate gene expression in human cortical neurons through long-range chromatin interactions, showing their role in cell-type specification.

1 citation

humanChIP-seq

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Molecular BiologybioRxivPreprintJun 12, 2024

Convergent gene pairs restrict chromatin looping in Dictyostelium discoideum, acting as directional barriers for extrusion

Irina V. Zhegalova, Sergey V. Ulianov, Aleksandra A. Galitsyna…·Sergey V. Razin

The paper investigates chromatin looping in Dictyostelium discoideum, finding that convergent gene pairs act as directional barriers for chromatin extrusion during development.

3 citations

DrosophilaChIP-seq

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GenomicsNucleic Acids ResearchPeer-reviewedApr 6, 2024

Extensive long-range polycomb interactions and weak compartmentalization are hallmarks of human neuronal 3D genome

Ilya A Pletenev, Mariia Bazarevich, Diana Zagirova…·Ekaterina E. Khrameeva

The paper maps 3D genome architecture in neuronal and non-neuronal cells, finding reduced compartmentalization and increased long-range polycomb interactions in neurons.

18 citations

humanHi-C

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