Author

Mark J. Mulligan

NYU Langone HealthORCID 0000-0001-7262-9746Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Immunology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Marie I. SamanoviciD· 2 shared Alireza Khodadadi‐JamayraniD· 1 shared Angie H. KimiD· 1 shared Azra Blazevic· 1 shared Bingjie ZhangiD· 1 shared Casey E. Gelber· 1 shared Chaitra SreenivasaiahiD· 1 shared Dan R. LittmaniD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersImmunology

Marie I. SamanovicORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

ImmunologybioRxivPreprintNov 3, 2025

Atypical memory B cells contribute to heterogeneous vaccine responses in ocrelizumab-treated patients with multiple sclerosis

Ryan Curtin, Yogambigai Velmurugu, Fatoumatta Dibba…·Michelle Krogsgaard

The paper examines how B-cell subsets in ocrelizumab-treated multiple sclerosis patients influence vaccine responses to SARS-CoV-2, identifying specific B-cell populations associated with immune response variability.

DOI 10.1101/2025.11.03.686372

humanflow cytometry

GenomicsbioRxivPreprintJan 24, 2023

Multimodal characterization of antigen-specific CD8+ T cells across SARS-CoV-2 vaccination and infection.

Bingjie Zhang, Rabi Upadhyay, Yuhan Hao…·Rahul Satija

The paper characterizes antigen-specific CD8+ T cells post-SARS-CoV-2 vaccination and infection using multimodal sequencing, identifying unique biomarkers and clinical predictors.

3 citations

humanscRNA-seq

Systems BiologyFrontiers in ImmunologyPeer-reviewedJan 19, 2023

The Vacc-SeqQC Project: Benchmarking RNA-Seq for Clinical Vaccine Studies

Johannes B. Goll, Steven E. Bosinger, Travis Lee Jensen…·Daniel Fredric Hoft

This study benchmarks RNA-Seq technical parameters in a clinical vaccine trial to establish guidelines for future studies.

4 citations

humanbulk RNA-seq