Author

Ilka Engelmann

Centre National de la Recherche ScientifiqueORCID 0000-0001-7489-3786Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:C. elegans· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:phylogenetics / evolution· 1 Approach:simulation· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Abay SisayiD· 1 shared Alexander DiltheyiD· 1 shared Andreas BergthaleriD· 1 shared Andreas WalkeriD· 1 shared Andrew NelsoniD· 1 shared Angie S. HinrichsiD· 1 shared Arash IranzadehiD· 1 shared Bani JollyiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Abay SisayORCID

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2 papers

Recent·Most cited

Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny

Martin Hunt, Angie S. Hinrichs, Daniel Anderson, Lily Karim, Bethany L. Dearlove, Jeff Knaggs, Bede Constantinides, Philip William Fowler, Gillian Rodger, Teresa Street, Sheila Lumley, Hermione J. Webster, Theo Sanderson, Christopher Ruis, Benjamin Kotzen, , Djin-Ye Oh

The paper reprocesses SARS-CoV-2 genomic data to correct systematic errors in phylogenies using a novel assembly tool, resulting in a cleaner global tree of 4.47 million samples.

Nature Methods · Feb 9, 2026Peer-reviewedBioinformatics

Modulatory upregulation of an insulin peptide gene by different pathogens in C. elegans

Song-Hua Lee, Shizue Omi, Nishant Thakur, Clara Taffoni, Jérôme Belougne, Ilka Engelmann, Jonathan J. Ewbank, Nathalie Pujol

This study shows that ins-11, an insulin peptide gene in C. elegans, is upregulated by different pathogens in specific tissues and influences immune responses and longevity.

Virulence · Feb 6, 2018Peer-reviewedGenetics