Jonathan J. Ewbank

YAAT identifies functionally-related gene groups by integrating co-expression and phylogenetic conservation data, revealing biases in gene set enrichment interpretation.

The paper uses nanopore sequencing to assemble Drechmeria coniospora genomes, revealing chromosome plasticity and highlighting the limitations of current long-read methods.

This study shows that ins-11, an insulin peptide gene in C. elegans, is upregulated by different pathogens in specific tissues and influences immune responses and longevity.

The paper demonstrates de novo long-read genome assembly of Nippostrongylus brasiliensis using MinION data, revealing complex DNA repeats and haplotypic variants.