Author

Sandipan Brahma

Fred and Pamela Buffett Cancer CenterORCID 0000-0001-7511-5409Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cancer Biology· 1 Cell Biology· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Assay:ChIP-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Jimmie Persinger· 2 shared Alexander EthelliD· 1 shared Angie RizzinoiD· 1 shared Arjun DhiriD· 1 shared Betta Chopard· 1 shared Briana D. Ormsbee· 1 shared Calvin K. LamiD· 1 shared Christopher B. GeyeriD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersMolecular Biology

Jimmie Persinger

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4 papers

Recent·Most cited

Molecular BiologybioRxivPreprintSep 3, 2026

SOX2 can associate with chromatin directly by binding to DNA or indirectly via association with other chromatin-bound proteins

Briana D. Ormsbee, Kabhilan Mohan, Ethan P. Metz…·Angie Rizzino

This study shows SOX2 can regulate gene expression both directly via DNA binding and indirectly through interactions with other chromatin proteins.

DOI 10.64898/2026.09.02.748901

𝕏 PostBluesky

Cell BiologybioRxivPreprintAug 24, 2026

Actin-related ACTL8 localizes to the nucleus and modulates locus-specific transcription through chromatin regulation

Nuria Cortes-Silva, Sanjana Banerjee, Kristen Dominique Amarillo…·Courtney M. Schroeder

This study identifies ACTL8 as a nuclear actin-related protein that modulates transcription through interaction with KDM5B, affecting migration pathways in cancer cells.

DOI 10.64898/2026.08.21.746286

humanbulk RNA-seq

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Cancer BiologyLeukemiaPeer-reviewedNov 10, 2025

The Splicing Factor PTBP1 interacts with RUNX1 and is Required for Leukemia Cell Survival

Arjun Dhir, Alexander Ethell, Riley Watkins…·R. Katherine Hyde

The paper identifies PTBP1 as a RUNX1 interacting partner required for leukemia cell survival through metabolic gene regulation.

2 citations

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GenomicsbioRxivPreprintJan 22, 2023

RNA Polymerase II, the BAF remodeler and transcription factors synergize to evict nucleosomes

Sandipan Brahma, Steven Henikoff

The paper investigates how RNA Polymerase II, BAF remodeler, and transcription factors interact to influence nucleosome eviction and chromatin accessibility in mouse embryonic stem cells.

8 citations

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