Author

Olivier Rué

Université Paris-SaclayORCID 0000-0001-7517-4724Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Valentin LouxiD· 2 shared An Hoang· 1 shared Cassandre Bedu-FerrariiD· 1 shared Cécile CalloniD· 1 shared Cécile NeuvégliseiD· 1 shared Céline Chollet· 1 shared Céline DelbèsiD· 1 shared Christelle Hennequet‐AntieriD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersSynthetic Biology

Valentin LouxORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Synthetic BiologyNature CommunicationsPeer-reviewedJun 27, 2026

Cell-free genome-wide transcriptomics through machine learning optimization

Léa Wagner, An Hoang, Olivier Rué…·Olivier Borkowski

The paper develops a cell-free transcriptomics platform using active learning to optimize buffer conditions, significantly increasing mRNA yield and enabling deeper insights into genome regulation.

DOI 10.1038/s41467-026-74559-y

bulk RNA-seqmachine learning (classical)

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MicrobiologybioRxivPreprintDec 15, 2025

Scratching on French PDO cheese surfaces sheds light on an unexplored microbial genomic and metabolic diversity

Hélène Gardon, Sibylle Tabuteau, Françoise Irlinger…·Vincent Hervé

The paper analyzes microbial diversity in French PDO cheeses using metagenomics and culturomics, identifying new species and functional clusters that may influence cheese flavor.

1 citation

metagenomicsexperimental assay

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MicrobiologymSystemsPeer-reviewedMar 5, 2024

In-depth characterisation of a selection of gut commensal bacteria reveals their functional capacities to metabolise dietary carbohydrates with prebiotic potential

Cassandre Bedu-Ferrari, Paul Biscarrat, Fréderic Pepke…·Claire Cherbuy

This study examines the metabolic capacities of gut commensal bacteria toward prebiotic carbohydrates, revealing strain-specific effects on metabolite production and gene expression.

30 citations

humanmetabolomics

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