Valentin Loux

The paper develops a cell-free transcriptomics platform using active learning to optimize buffer conditions, significantly increasing mRNA yield and enabling deeper insights into genome regulation.

The paper analyzes microbial diversity in French PDO cheeses using metagenomics and culturomics, identifying new species and functional clusters that may influence cheese flavor.

The paper introduces F3M, a tool suite for functional profiling of food microbiomes, including a curated database, gene catalog builder, and R package for analyzing metatranscriptomic data.

This study measures the mutation rate of phage lambda and finds it is higher than its host E. coli but not significantly increased by MMR inactivation.

This paper introduces MilkOligoCorpus, a manually annotated corpus for extracting structured data on milk oligosaccharides, along with annotation guidelines and terminological resources.

Omnicrobe integrates microbial habitat and phenotype data from multiple sources using text mining and ontology-based indexing to support microbiology research.

The paper analyzes the genomes of Enterococcus cecorum isolates to identify genetic features associated with clinical disease and track their spread.