Brian D. Gregory

This study identifies dihydrouridine (DHU) modification as a regulator of transcript turnover and photosynthetic capacity in plants under abiotic stress.

This study uses snRNA-seq to analyze sorghum leaf development, revealing that trichomes and bulliform cells exist in both juvenile and adult stages with stage-specific gene expression patterns.

This study identifies Arabidopsis DXO1 as a diverged ortholog involved in 5'-end RNA quality control, ribosome loading, and mRNA surveillance through its serine-rich N-terminal domain.

HAMRLNC is a computational pipeline for analyzing RNA-seq data to quantify transcript abundance, infer RNA modifications, and annotate lncRNAs, producing labeled figures for visualization.

The paper identifies and functionally annotates ~130,000 lincRNAs in four Brassicaceae species using RNA-seq and epigenomic data, highlighting conserved motifs and stress-responsive features.

HIPPIE2 identifies physically interacting chromatin regions with high resolution and reproducibility across human cell lines.

The paper isolates and sequences AGO-bound RNAs to study pre-miRNA processing in human and mouse cells, identifying novel pre-miRNAs and processing characteristics.