Author

Lily A. Nematollahi

The Francis Crick InstituteORCID 0000-0001-7581-6547Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Assay:proteomics· 1

Frequent Co-Authors

Erika Alden DeBenedictisiD· 2 shared Alireza Alidoust· 1 shared Amanda Reider ApeliD· 1 shared Andi DhrosoiD· 1 shared André Arashiro PulscheniD· 1 shared Anjali ChadhaiD· 1 shared Ari SatanowskiiD· 1 shared Aviv SpinneriD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioengineering

Erika Alden DeBenedictisORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BioengineeringbioRxivPreprintMay 29, 2026

GROQ-seq Datasets Across Transcription Factors (LacI, RamR, VanR), T7 RNA Polymerase and TEV Protease

Aviv Spinner, Shwetha Sreenivasan, James R. McLellan…·Catherine Baranowski

The paper introduces GROQ-seq, a high-throughput platform for linking protein function to sequencing data, and presents pilot datasets for transcription factors, polymerases, and proteases.

3 citations

E. colibulk RNA-seq

𝕏 PostBluesky

BiochemistryNature CommunicationsPeer-reviewedMar 24, 2026

Continuous evolution of a halogenase enzyme with improved solubility and activity for sustainable bioproduction

André Arashiro Pulschen, Justin Booth, Ari Satanowski…·Erika Alden DeBenedictis

This paper evolves a halogenase enzyme to improve solubility and activity, enabling higher yields of halogenated compounds for sustainable bioproduction.

3 citationstop 4%

proteomicsdeep learning

𝕏 PostBluesky