Danny Bergeron

NanoCutSight is a nanopore sequencing pipeline to quantify indels and identify modification types in genome editing, benchmarked on guide RNAs in cell and organoid models.

The paper identifies 5 alternative splicing events associated with TGFβ-induced myofibroblast activation using RNA-Seq and validates them in independent datasets.

RNAcentral integrates literature and gene-level data to enhance non-coding RNA sequence analysis and functional understanding.

The paper quantifies snoRNA abundance across seven human tissues and identifies two distinct abundance classes with different host gene relationships and regulatory features.