Author

Chuya Shinzato

Atmosphere and Ocean Research Institute, The University of TokyoORCID 0000-0001-7843-3381Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 2 Zoology· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Assay:whole-genome sequencing· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:non-human primate· 2 Research Focus:differential expression· 1

Frequent Co-Authors

Taiga UchidaiD· 3 shared Eiichi ShoguchiiD· 2 shared Go Shimada· 2 shared Hiroshi YamashitaiD· 2 shared Mayumi KawamitsuiD· 2 shared Noriyuki SatohiD· 2 shared Amaury HerpiniD· 1 shared Cécile DonnadieuiD· 1 shared

Activity by Year

2020-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersZoology

Taiga UchidaORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

ZoologyCurrent BiologyPeer-reviewedApr 24, 2026

Genomic insights into photosymbiosis in giant clams: Comparisons with coral strategies

Taiga Uchida, Hiroshi Yamashita, Go Shimada…·Chuya Shinzato

This study compares the molecular mechanisms of photosymbiosis in giant clams with corals, identifying conserved and divergent strategies in nutrient exchange.

5 citationstop 1%

whole-genome sequencingbulk RNA-seq

𝕏 PostBluesky

ZoologybioRxivPreprintFeb 14, 2026

Possible Novel Sulfolipid Utilization Pathway in Giant Clams and Other Aquatic Invertebrates: Implications for Photosymbiosis and Sulfur Cycling

Taiga Uchida, Hiroshi Yamashita, Go Shimada…·Chuya Shinzato

DOI 10.64898/2026.02.11.705467

non-human primatewhole-genome sequencing

𝕏 PostBluesky

GenomicsCommunications BiologyPeer-reviewedJul 24, 2024

A genome and tissue-specific transcriptomes of the large-polyp coral, Fimbriaphyllia (Euphyllia) ancora: Recipe for a coral polyp

Shinya Shikina, Yuki Yoshioka, Yi‐Ling Chiu…·Chuya Shinzato

The paper reports genome and transcriptome analyses of four tissues in the coral Fimbriaphyllia ancora, revealing tissue-specific gene expression and biological functions.

5 citations

non-human primatebulk RNA-seq

𝕏 PostBluesky

Systems BiologybioRxivPreprintOct 25, 2021

Multi-omics analysis reveals cross-organism interactions in coral holobiont

Toru Maruyama, Michihiro Ito, Satoshi Wakaoji…·Haruko Takeyama

The paper uses multi-omics data to analyze cross-organism interactions in coral holobionts, revealing host dominance over zooxanthellae and immune responses triggered by Endozoicomonas bacteria.

7 citations

humanmouse

𝕏 PostBluesky

GenomicsG3 Genes Genomes GeneticsPeer-reviewedJan 27, 2020

Genome sequence of the euryhaline Javafish medaka, Oryzias javanicus: a small aquarium fish model for studies on adaptation to salinity.

Yusuke Takehana, Margot Zahm, Cédric Cabau…·Amaury Herpin

The paper presents a high-quality draft genome assembly of Oryzias javanicus, focusing on its adaptation to salinity.

41 citations

zebrafishwhole-genome sequencing

𝕏 PostBluesky