Cédric Cabau

The paper presents new chromosome-level haplotyped genome assemblies for the Japanese quail, improving contiguity and completeness compared to previous references.

This study maps transcriptome changes in rabbit intestinal epithelial cells during the suckling-to-weaning transition, revealing cell-type-specific responses to solid food intake.

This study uses scRNA-seq to show that ALI culture enhances goblet cell differentiation and reduces glycolysis in rabbit caecum organoids, more closely mirroring in vivo gene expression patterns.

The paper builds a reference genome for Cylicocyclus nassatus, estimates its genetic diversity across regions, and identifies genetic candidates for pyrantel resistance.

The paper develops a methyl-seq tool to identify genomic imprinted loci by detecting parent-of-origin methylation in 165 candidate regions.

The paper compares genomes across multiple fish species to study the evolutionary changes in the amhr2bY gene, a key sex-determining gene, revealing gains and losses in different Percidae species.

The paper identifies a truncated duplication of the amhr2 gene on the Y chromosome in Pangasiid catfishes as a conserved master sex-determining gene.

This study characterizes the sex determination system and sex chromosomes in goldfish, identifying a large non-recombining region on linkage group 22 as the likely Y chromosome and developing sex-linked genetic markers.

SCORPiOs improves gene phylogenies in teleost fish by integrating syntenic information, resolving inconsistencies in 70% of gene families and enhancing congruence with species trees and expression patterns.

The paper presents a high-quality draft genome assembly of Oryzias javanicus, focusing on its adaptation to salinity.

The paper presents a chromosome-scale genome assembly of yellow perch and identifies a Y-specific duplication of the amhr2 gene as a candidate sex determination gene.

The paper annotates transcriptomes and chromatin structures in liver and T cells from four livestock species using RNA-seq, ATAC-seq, and Hi-C, revealing conserved regulatory elements and genome organization patterns.