Author

Ryo Yoshida

Japan Science and Technology AgencyORCID 0000-0001-8092-0162Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Ryo Yoshida1 paper · RIKEN Center for Biosystems Dynamics Research

Biology Disciplines

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Neuroscience· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:C. elegans· 3 Assay:imaging· 3 Research Focus:cell type annotation· 2 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Approach:matrix factorization· 1 Approach:statistical model· 1

Frequent Co-Authors

Takayuki TeramotoiD· 3 shared Takeshi IshiharaiD· 3 shared Yuichi IinoiD· 3 shared Yuishi IwasakiiD· 3 shared Hirofumi SatoiD· 2 shared Manami Kanamori· 2 shared Moon‐Sun JangiD· 2 shared Stephen WuiD· 2 shared

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2018-2022 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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3 shared papersNeuroscience

Takayuki TeramotoORCID

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3 papers

Recent·Most cited

NeurosciencebioRxivPreprintNov 18, 2022

Deducing ensemble dynamics and information flow from the whole-brain imaging data

Yu Toyoshima, Hirofumi Sato, Daiki Nagata…·Yuichi Iino

The paper analyzes whole-brain imaging data of C. elegans to decompose neural dynamics and model information flow using time-delay embedding, independent component analysis, and dimensionality reduction techniques.

1 citation

C. elegansimaging

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NeuroscienceBMC BiologyPeer-reviewedMar 18, 2020

An annotation dataset facilitates automatic annotation of whole-brain activity imaging of C. elegans

Yu Toyoshima, Stephen Wu, Manami Kanamori…·Yuichi Iino

The paper creates a dataset of neuron expression patterns and positions in C. elegans to improve annotation of whole-brain imaging data.

48 citations

C. elegansimaging

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BioinformaticsbioRxivPreprintNov 7, 2018

An ensemble learning approach to auto-annotation for whole-brain C. elegans imaging

Stephen Wu, Y. Toyoshima, M.S. Jang…·Ryo Yoshida

This study develops an ensemble learning approach for automated annotation of whole-brain C. elegans imaging data, achieving 25% error in neuron annotation.

2 citations

C. elegansimaging

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