Author

Manami Kanamori

The University of Tokyo

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 2 Bioengineering· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:C. elegans· 3 Assay:imaging· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:clustering· 1 Research Focus:database / resource· 1 Research Focus:dimensionality reduction· 1 Approach:matrix factorization· 1

Frequent Co-Authors

Yu ToyoshimaiD· 4 shared Yuichi IinoiD· 4 shared Suzu Oe· 3 shared Takeshi IshiharaiD· 3 shared Hirofumi SatoiD· 2 shared Koyo Kuze· 2 shared Moon‐Sun JangiD· 2 shared Ryo YoshidaiD· 2 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersNeuroscience

Yu ToyoshimaORCID

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Author profile →

4 papers

Recent·Most cited

Image-scanning light-sheet microscopy for high-speed volumetric imaging of complex biological dynamics

Yusuke Tomina, Ayumu Ishijima, Yu Toyoshima, Hikaru Shishido, Ryu Hirooka, Kazuki Mukumoto, Chentao Wen, Manami Kanamori, Koyo Kuze, Yuko Murakami, Suzu Oe, Sae Tanaka, Yusuke Yonamine, Yukinori Nishigami, Keisuke Goda, , Hideharu Mikami

The paper introduces image-scanning light-sheet microscopy to enable high-speed volumetric imaging of complex biological dynamics with improved speed while maintaining resolution and efficiency.

bioRxiv · Apr 9, 2026 · PreprintBioengineering

CGC1, a new reference genome for Caenorhabditis elegans

Kazuki Ichikawa, Massa J. Shoura, Karen L. Artiles, Dae‐Eun Jeong, Chie Owa, Haruka Kobayashi, Yoshihiko Suzuki, Manami Kanamori, Yu Toyoshima, Yuichi Iino, Ann E. Rougvie, Lamia Wahba, Andrew Z. Fire, Erich M. Schwarz, Shinichi Morishita

The paper presents a new gap-free, telomere-to-telomere reference genome for C. elegans, CGC1, improving upon previous assemblies and providing a more complete genome.

Genome Research · Aug 1, 2025Peer-reviewedGenomics

Deducing ensemble dynamics and information flow from the whole-brain imaging data

Yu Toyoshima, Hirofumi Sato, Daiki Nagata, Manami Kanamori, Moon‐Sun Jang, Koyo Kuze, Suzu Oe, Takayuki Teramoto, Yuishi Iwasaki, Ryo Yoshida, Takeshi Ishihara, Yuichi Iino

The paper analyzes whole-brain imaging data of C. elegans to decompose neural dynamics and model information flow using time-delay embedding, independent component analysis, and dimensionality reduction techniques.

bioRxiv · Nov 18, 2022 · PreprintNeuroscience

An annotation dataset facilitates automatic annotation of whole-brain activity imaging of C. elegans

Yu Toyoshima, Stephen Wu, Manami Kanamori, Hirofumi Sato, Moon‐Sun Jang, Suzu Oe, Yuko Murakami, Takayuki Teramoto, Chanhyun Park, Yuishi Iwasaki, Takeshi Ishihara, Ryo Yoshida, Yuichi Iino

The paper creates a dataset of neuron expression patterns and positions in C. elegans to improve annotation of whole-brain imaging data.

BMC Biology · Mar 18, 2020Peer-reviewedNeuroscience