Author

John C. Braisted

National Institutes of HealthORCID 0000-0001-8093-6463Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Developmental Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Andrew C. PattiD· 1 shared Anton M. SimeonoviD· 1 shared Ben Ernest· 1 shared Bryan QuemeiD· 1 shared Carlos A. TristaniD· 1 shared Claire WeberiD· 1 shared Cole Tindall· 1 shared Ewy A. MathéiD· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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1 shared paperBioinformatics

Andrew C. PattORCID

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3 papers

Recent·Most cited

BioinformaticsJournal of CheminformaticsPeer-reviewedMar 31, 2023

qHTSWaterfall: 3-dimensional visualization software for quantitative high-throughput screening (qHTS) data

Bryan Queme, John C. Braisted, Patricia K. Dranchak, James Inglese

The paper introduces qHTSWaterfall, a 3D visualization tool for qHTS data, enabling the plotting of concentration-response curves with EC50 and Hill slope parameters.

4 citations

statistical modelexperimental assay

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BioinformaticsBioinformaticsPeer-reviewedNov 14, 2022

RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from genes, proteins, and metabolites

John C. Braisted, Andrew C. Patt, Cole Tindall…·Ewy A. Mathé

RaMP-DB 2.0 provides an updated database and tools for functional interpretation of metabolomic and multi-omic data, with enhanced annotations and enrichment analysis capabilities.

68 citationstop 5%

metabolomicsstatistical model

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Developmental BiologybioRxivPreprintMar 21, 2022

Enhancing the Fitness of Embryoid Bodies and Organoids by Chemical Cytoprotection

Seungmi Ryu, Claire Weber, Pei‐Hsuan Chu…·Ilyas Singeç

This paper shows that using a small molecule cocktail called CEPT during cell aggregation improves the survival and quality of embryoid bodies and organoids derived from human pluripotent stem cells.

3 citations

humanbulk RNA-seq

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