Author

Maayan Schwarzkopf

California Institute of TechnologyORCID 0000-0001-8128-1059Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Developmental Biology· 2 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:spatial domain detection· 2 Assay:spatial transcriptomics· 2 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Niles A. PierceiD· 3 shared Harry M. T. ChoiiD· 2 shared Alexandre CunhaiD· 1 shared Aneesh AcharyaiD· 1 shared Georgios Artavanis· 1 shared Johannes StegmaieriD· 1 shared Lisa M. Hochrein· 1 shared Mark E. FornaceiD· 1 shared

Activity by Year

2018-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersDevelopmental Biology

Niles A. PierceORCID

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3 papers

Recent·Most cited

Developmental BiologyDevelopmentPeer-reviewedNov 15, 2021

Hybridization chain reaction enables a unified approach to multiplexed, quantitative, high-resolution immunohistochemistry and in situ hybridization

Maayan Schwarzkopf, Mike C. Liu, Samuel J. Schulte…·Niles A. Pierce

This paper introduces a method using hybridization chain reaction for multiplexed, quantitative, high-resolution imaging of both proteins and RNA in challenging tissues.

118 citationstop 4%

spatial transcriptomicsimaging

𝕏 PostBluesky

Synthetic BiologyACS Synthetic BiologyPeer-reviewedDec 7, 2018

Signal Transduction in Human Cell Lysate via Dynamic RNA Nanotechnology

Lisa M. Hochrein, Tianjia Jessie Ge, Maayan Schwarzkopf, Niles A. Pierce

The paper demonstrates scRNAs that perform conditional RNA interference in human cell lysate, showing programmable signal transduction between mRNAs X and Y with a 20-fold response difference.

16 citations

humanscRNA-seq

𝕏 PostBluesky

Developmental BiologyDevelopmentPeer-reviewedJun 15, 2018

Third-generation in situ hybridization chain reaction: multiplexed, quantitative, sensitive, versatile, robust

Harry M. T. Choi, Maayan Schwarzkopf, Mark E. Fornace…·Niles A. Pierce

This paper introduces third-generation in situ HCR with automatic background suppression, enabling multiplexed, quantitative mRNA imaging and flow cytometry with improved performance and ease-of-use.

1,493 citationstop 1%

spatial transcriptomicsexperimental assay

𝕏 PostBluesky