Author

Andrew D. Bailey

University of California, Santa CruzORCID 0000-0001-8304-7565Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 2 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:yeast· 1

Frequent Co-Authors

Benedict PateniD· 2 shared Hongxu DingiD· 2 shared Alejandra Durán· 1 shared Haller IgeliD· 1 shared Ioannis N. AnastopoulosiD· 1 shared Jason TalkishiD· 1 shared Joshua M. StuartiD· 1 shared Manuel AresiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 26 mutual co-author links

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2 shared papersMolecular Biology

Benedict PatenORCID

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2 papers

Recent·Most cited

Molecular BiologyeLifePeer-reviewedApr 6, 2022

Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling

Andrew D. Bailey, Jason Talkish, Hongxu Ding…·Manuel Ares

The paper develops a method to profile single-molecule RNA modifications in yeast rRNA, revealing concerted modifications at functional centers and subpopulation changes in ribosome biogenesis.

46 citations

yeastlong-read sequencing

𝕏 PostBluesky

BioinformaticsNature CommunicationsPeer-reviewedNov 11, 2021

Towards Inferring Nanopore Sequencing Ionic Currents from Nucleotide Chemical Structures

Hongxu Ding, Ioannis N. Anastopoulos, Andrew D. Bailey…·Benedict Paten

The paper presents a deep learning framework to predict nanopore sequencing ionic currents from nucleotide chemical structures and demonstrates its ability to generalize chemical information for modified nucleotides.

13 citations

long-read sequencingdeep learning

𝕏 PostBluesky