Bruno Hüettel

The paper develops a composite genome approach to analyze TF occupancy diversity in barley using short-read data, showing improved accuracy over SNP-replacement strategies for MOA-seq analyses.

This study compares holocentromere organization in two Cyperaceae subfamilies, revealing differences in repeat structure and protein distribution associated with centromere function.

This study identifies conserved TIR-only proteins in dicots and monocots that promote basal immunity and transcriptional defense independently of NLR pathways.

This study uses proteogenomics to show that transposable elements in Blumeria hordei generate novel transcripts and proteins.

The paper benchmarks single-cell methods for meiotic recombination mapping in Arabidopsis thaliana and introduces tools to detect crossovers and haplotypes from sparse sequencing data.

This study shows that Rhynchospora tenuis undergoes obligate achiasmy in both sexes, leading to clonal-like inheritance through post-meiotic selection and TE-driven segregation distortion.

The paper links karyotype evolution to meiotic recombination by analyzing holocentric genomes and crossover patterns in Rhynchospora species.

The paper analyzes Tyba satellite DNA repeats and transposable elements in holocentric species to reveal evolutionary dynamics of repeat-based holocentromeres across a pangenome.

The paper presents a high-resolution multi-omics dataset of surface ocean metagenomes, metatranscriptomes, and tRNA transcripts collected over 48 hours to study microbial responses to environmental change.

The paper identifies a fungal gene encoding a β-1,3-glucanase as a key genetic factor driving multi-host infection in Plectosphaerella cucumerina.

This study defines the mutation spectrum in Arabidopsis thaliana centromeres, showing higher point mutation rates and homology-directed repair-driven indels.

The paper studies Rickettsiales microbiomes in placozoans to reveal evolutionary shifts towards mutualism, finding some symbionts have lost parasitic traits.

The paper presents a high-quality reference genome for the Ural Owl and investigates cell culture as a genomic resource for conservation.

The paper sequences full-length RNA transcripts from multiple mouse species to catalog isoform diversity and refine genome annotation.

This study investigates genome development in Loxodes magnus, finding no canonical IESs or editing hallmarks during MIC-to-MAC development, suggesting a loss or streamlining of genome editing processes.

This paper develops a method to map eQTLs using snRNA-seq of gametes from a small number of heterozygous individuals, uncovering cis- and trans-eQTLs in Arabidopsis pollen nuclei.

The paper analyzes somatic mutations in an Apricot tree, finding most mutations are layer-specific and can lead to somaclonal phenotypic variation.

This paper establishes Cardamine chenopodiifolia as a model system for studying amphicarpy, identifying differentially expressed genes and developmental differences between above- and below-ground fruits.

The paper identifies repeat-based holocentromeres in Luzula sylvatica and proposes mechanisms for the evolutionary transition from monocentric to holocentric chromosomes.

The paper investigates meiotic recombination dynamics in a holocentric plant, finding that telomere-led pairing drives a U-shaped crossover distribution, independent of centromere organisation.

The paper analyzes IESs in Blepharisma stoltei, revealing MITEs as a major source of IESs and challenging current models of transposon domestication in ciliates.

The paper presents a chromosome-scale, haplotype-resolved genome assembly of a tetraploid potato cultivar using long reads, single-cell sequencing, and Hi-C data, revealing insights into its genetic structure and recent inbreeding history.

The paper shows that megabase-scale recombination landscapes in Arabidopsis are independent of sequence divergence and can be predicted by chromatin features.

The paper reports the somatic genome of Blepharisma stoltei, identifying a PiggyBac transposase homolog as a potential IES excisase, suggesting an evolutionary origin for genome editing.

The paper presents the genome of Lepeophtheirus salmonis, revealing copepod-specific features and parasitic adaptations, including gene expression shifts and loss of peroxisomes.

This study evaluates the effectiveness of target capture sequencing (TCS) for characterizing repetitive DNA in Rhynchospora species, showing reliable results comparable to genome skims.

This paper develops a method to generate chromosome-level, haplotype-resolved genome assemblies using single-cell sequencing of gametes, demonstrating it on apricot trees.

The paper develops a linked-read sequencing method to efficiently identify meiotic crossovers at kilobase resolution in pooled recombinants, validated in Arabidopsis.

The paper presents a chromosome-arm level assembly of the Arabidopsis thaliana Nd-1 genome, revealing genomic rearrangements and gene set differences compared to the Col-0 reference.