Korbinian Schneeberger

This study presents a chromosome-scale genome assembly of Edelweiss, revealing its recent allotetraploid origin and localized subgenome dominance.

This study examines the evolutionary diversification of SymRK receptor family in land plants, revealing conserved and expanded clades with distinct transcriptional and evolutionary characteristics.

The paper benchmarks single-cell methods for meiotic recombination mapping in Arabidopsis thaliana and introduces tools to detect crossovers and haplotypes from sparse sequencing data.

This study shows that Rhynchospora tenuis undergoes obligate achiasmy in both sexes, leading to clonal-like inheritance through post-meiotic selection and TE-driven segregation distortion.

This study identifies convergent genetic adaptations to serpentine soil in two Alyssum species and compares them to Arabidopsis arenosa to find shared pathways.

This study defines the mutation spectrum in Arabidopsis thaliana centromeres, showing higher point mutation rates and homology-directed repair-driven indels.

The paper curates and presents a collection of long-read genome assemblies for Arabidopsis thaliana accessions to enhance plant genome research.

This paper develops a method to map eQTLs using snRNA-seq of gametes from a small number of heterozygous individuals, uncovering cis- and trans-eQTLs in Arabidopsis pollen nuclei.

The paper analyzes somatic mutations in an Apricot tree, finding most mutations are layer-specific and can lead to somaclonal phenotypic variation.

This study investigates the effects of chemically induced transposon mobilization on genomic imprinting in Arabidopsis endosperm, showing preferential targeting of maternally expressed genes and transcriptional deregulation.

The paper investigates meiotic recombination dynamics in a holocentric plant, finding that telomere-led pairing drives a U-shaped crossover distribution, independent of centromere organisation.

The paper identifies and analyzes de novo mutations and somatic gene conversions in an apple tree's sport mutation, linking them to fruit coloration changes and genomic biases.

plotsr visualizes structural similarities and rearrangements between multiple genomes, allowing comparison at chromosome level or specific regions with additional data tracks.

The paper presents a chromosome-scale, haplotype-resolved genome assembly of a tetraploid potato cultivar using long reads, single-cell sequencing, and Hi-C data, revealing insights into its genetic structure and recent inbreeding history.

The paper shows that megabase-scale recombination landscapes in Arabidopsis are independent of sequence divergence and can be predicted by chromatin features.

Ultra-long-read sequencing resolves Arabidopsis centromeres, revealing their genetic and epigenetic structure and dynamics.

This paper develops a method to generate chromosome-level, haplotype-resolved genome assemblies using single-cell sequencing of gametes, demonstrating it on apricot trees.

The paper reports chromosome-level assemblies of seven Arabidopsis thaliana genomes, identifying rearrangement hotspots linked to biotic stress response genes and altered evolutionary dynamics.

This study uses cybrids to show that plasmotype variation affects plant phenotypes through additive and epistatic interactions, with epistasis explaining more variance than additivity.

SyRI identifies genomic rearrangements and local variations from whole-genome assemblies by analyzing co-linear regions and classifying structural differences.

The paper develops a linked-read sequencing method to efficiently identify meiotic crossovers at kilobase resolution in pooled recombinants, validated in Arabidopsis.

This study identifies LUC7 as a U1 snRNP accessory protein in Arabidopsis that regulates alternative splicing and is essential for plant development and stress response.

The paper investigates the origin and evolutionary consequences of gene body DNA methylation by studying the loss of this feature in two angiosperms, finding that CMT3 is essential for its establishment.

The paper examines DNA methylation changes in Arabidopsis thaliana lines over a century, finding minimal divergence despite varied environments and genetic similarity.