Manish Goel

The paper analyzes somatic mutations in an Apricot tree, finding most mutations are layer-specific and can lead to somaclonal phenotypic variation.

plotsr visualizes structural similarities and rearrangements between multiple genomes, allowing comparison at chromosome level or specific regions with additional data tracks.

The paper presents a chromosome-scale, haplotype-resolved genome assembly of a tetraploid potato cultivar using long reads, single-cell sequencing, and Hi-C data, revealing insights into its genetic structure and recent inbreeding history.

This paper develops a method to generate chromosome-level, haplotype-resolved genome assemblies using single-cell sequencing of gametes, demonstrating it on apricot trees.

SyRI identifies genomic rearrangements and local variations from whole-genome assemblies by analyzing co-linear regions and classifying structural differences.