Author

Stephanie LaHaye

Nationwide Children's HospitalORCID 0000-0001-8625-4199Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Approach:statistical model· 3 Research Focus:variant calling· 3 Assay:ChIP-seq· 2 Research Focus:differential expression· 2 Assay:bulk RNA-seq· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Benjamin KellyiD· 3 shared James FitchiD· 3 shared Peter WhiteiD· 3 shared Anthony R. MilleriD· 2 shared Benjamin D. SunkeliD· 2 shared Benjamin Z. StantoniD· 2 shared Catherine E. CottrelliD· 2 shared Daniel C. KoboldtiD· 2 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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3 shared papersGenomics

Benjamin KellyORCID

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Author profile →

4 papers

Recent·Most cited

GenomicsCell Reports MethodsPeer-reviewedMay 19, 2025

Highly quantitative measurement of differential protein-genome binding with PerCell chromatin sequencing

Alexi M Tallan, Jack P. Kucinski, Benjamin D. Sunkel…·Benjamin Z. Stanton

The paper introduces a low-cost, flexible method for quantitative chromatin sequencing and enables cross-species epigenomic comparisons.

1 citation

𝕏 PostBluesky

Genetic & Genomic MedicineEpilepsiaPeer-reviewedJun 10, 2022

Detection of brain somatic variation in epilepsy-associated developmental lesions

Tracy A. Bedrosian, Katherine E. Miller, Olivia E. Grischow…·Daniel C. Koboldt

The paper identifies somatic and germline genetic variations in brain tissue from children with epilepsy-associated developmental lesions, highlighting new candidate genes and structural variations.

55 citationstop 1%

humanwhole-exome sequencing

𝕏 PostBluesky

GenomicsBMC GenomicsPeer-reviewedDec 1, 2021

Discovery of Clinically Relevant Fusions in Pediatric Cancer

Stephanie LaHaye, James Fitch, Kyle Voytovich…·Peter White

The paper develops an ensemble fusion-calling pipeline to improve the detection of clinically relevant gene fusions in pediatric cancer, identifying 67 fusions with a 29.3% diagnostic yield.

31 citationstop 3%

humanbulk RNA-seq

𝕏 PostBluesky

GenomicsiSciencePeer-reviewedJul 16, 2021

Pioneer activity of an oncogenic fusion transcription factor at inaccessible chromatin

Benjamin D. Sunkel, Meng Wang, Stephanie LaHaye…·Benjamin Z. Stanton

This study investigates the chromatin-binding properties of the oncogenic PAX3-FOXO1 fusion protein using pc-ChIP-seq, revealing its pioneer function at repressed chromatin in RMS cells.

45 citations

𝕏 PostBluesky