Author

Amelie Plymoth

Karolinska InstitutetORCID 0000-0001-8686-3760Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:cell-cell communication· 2 Research Focus:differential expression· 2 Organism:human· 2 Research Focus:benchmarking· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Amoako DuahiD· 2 shared Eric J. AlmiD· 2 shared Fatimah Ibrahim· 2 shared John Rusine· 2 shared Lewis Roberts· 2 shared Mathieu GroussiniD· 2 shared Mathilde PoyetiD· 2 shared Tan Maw Pin· 2 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersMicrobiology

Amoako DuahORCID

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2 papers

Recent·Most cited

Host transcriptional responses to gut microbiome variation arising from urbanism

Sabrina Arif, Shreya Nirmalan, Adnan Alazizi, Henriette Mair-Meijers, Adwoa Agyei, Mary Y. Afihene, Shadrack O. Asibey, Yaw A. Awuku, Amoako Duah, Amelie Plymoth, Yvonne Nartey, Lewis Roberts, Kenneth Valles, Fatimah Ibrahim, Yvonne A. L. Lim, , Ran Blekhman

The paper compares host transcriptional responses to urban and rural gut microbiomes, finding urban microbiomes affect innate immune pathways and high-diversity microbiomes trigger stronger host responses.

bioRxiv · Oct 26, 2025 · PreprintMicrobiology

Industrialization drives convergent microbial and physiological shifts in the human metaorganism

Mathilde Poyet, Malte Christoph Rühlemann, Ana Paula Schaan, Yue Ma, Lucas Moitinho‐Silva, Eike Matthias Wacker, Hannah Jebens, Lucas Patel, Le Thanh Tu Nguyen, Alexis Zimmer, Damian Rafal Plichta, Daniel McDonald, Christine R. Stevens, Adwoa Agyei Nkansah, Mary Afihene, , Mathieu Groussin

The paper investigates how industrialization affects microbial and physiological traits in the human gut across diverse populations, finding homogenized microbiomes, reduced diversity, and impaired disease prediction accuracy in less industrialized groups.

bioRxiv · Oct 20, 2025 · PreprintMicrobiology