Sissel Jentoft

The paper identifies genomic architectures associated with parasitism loss in lampreys, showing distinct genomic features across different ecotypes and highlighting independent evolutionary paths.

The paper evaluates reference genome bias in population sequencing datasets of Arctic and polar cod using species-specific chromosome-anchored genomes, showing its impact on genetic statistics and chromosomal inversion detection.

The paper identifies and quantifies transposable elements in chromosomal inversion breakpoints in Atlantic cod, showing their role in driving ectopic recombination and chromosomal reorganization.

The paper uses genomic data from Eastern Baltic cod to show evolutionary changes due to fishing pressure, identifying loci under directional selection linked to growth and reproduction.

The paper presents and compares whole-genome assemblies of two lamprey species, suggesting they form a species complex with distinct ecotypes.

The paper introduces SEQIDIST, a framework to improve eDNA metagenomics accuracy by reducing false positives and discovering new biodiversity, tested on riverine eDNA data.

This study compares eDNA metabarcoding and electrofishing for assessing freshwater fish communities, finding similar species richness but differing compositions influenced by habitat and ecology.

The paper identifies chromosomal fusions and inversions in Arctic codfish genomes, showing their role in adaptation to cold environments and speciation.

The paper identifies genomic rearrangements in polar cod, showing their role in population divergence and potential local adaptation despite high gene flow.

The paper compares de novo and reference genome-based transcriptome assembly pipelines for differential expression analysis in Atlantic cod, finding that Trinity offers higher sensitivity for detecting biologically meaningful expression differences, while the new Tuxedo pipeline provides higher quality assembly.

This paper develops a method to assign biological characteristics from extremely low-coverage whole-genome sequence data, demonstrating accuracy in population identity and inversion haplotypes across species and ancient specimens.

The paper presents the genome of the great gerbil, identifying a duplicated MHCII DRB gene associated with resistance to plague.

This study shows that standing genetic variation and chromosomal rearrangements contribute to local adaptation in capelin despite high gene flow.

This study uses long-read sequencing to analyze hemoglobin gene clusters across eight codfish species, revealing conserved organization and lineage-specific duplications.

The paper analyzes the grayling genome to study regulatory divergence of Ss4R duplicates after whole genome duplication, finding purifying selection and adaptive divergence in brain-related and immune functions.

The paper sequenced and assembled the haddock genome, revealing high tandem repeat density and expanded immune gene families common to codfishes.

The paper improves the Atlantic cod genome assembly using long-read sequencing and multiple assembly programs, revealing a high density of tandem repeats and heterozygous variation.