Author

Nathan R. Zuniga

Brigham Young UniversityORCID 0000-0001-8718-0638Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:proteomics· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:mouse· 1 Approach:statistical model· 1

Frequent Co-Authors

Steven P. GygiiD· 2 shared Steven R. ShukeniD· 2 shared Alexander MakaroviD· 1 shared Alexander Wagner· 1 shared Ariel E. A. Denos· 1 shared Benjamin S. JonesiD· 1 shared Bernard DelangheiD· 1 shared Bernd Hagedorn· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBiochemistry

Steven P. GygiORCID

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3 papers

Recent·Most cited

BiochemistrybioRxivPreprintFeb 26, 2026

High Resolution Multi-Pass Astral Analyzer Quantification Enables Highly Multiplexed 35-Plex Tandem Mass Tag Proteomics

Hamish Stewart, Steven R. Shuken, Christopher Rathje…·Steven P. Gygi

This paper introduces a high-resolution multi-pass Astral analyzer mode for TMT proteomics, enabling 35-plex quantification with improved depth and precision.

DOI 10.64898/2026.02.24.707764

humanyeast

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BiochemistrybioRxivPreprintSep 10, 2025

Next-Generation Multiplexed Targeted Proteomics Quantifies Post-Translational Modifications, Compound-Protein Interactions, and Disease Biomarkers with High Throughput

Steven R. Shuken, Geordon A. Frere, Charlotte R. Beard…·Qing Yu

GoDig 2.0 improves targeted proteomics by increasing multiplexing, efficiency, and target coverage, enabling analysis of post-translational modifications and compound-protein interactions.

1 citation

humanproteomics

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BiochemistryPLoS Computational BiologyPeer-reviewedDec 12, 2024

Quantitative and Kinetic Proteomics Reveal ApoE Isoform-dependent Proteostasis Adaptations in Mouse Brain

Nathan R. Zuniga, Noah E. Earls, Ariel E. A. Denos…·John C. Price

This study uses quantitative and kinetic proteomics to show that ApoE isoforms 2 and 4 alter mitochondrial protein regulation in the mouse brain compared to ApoE3, with distinct impacts on proteostasis.

8 citations

mouseproteomics

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