Author

Michaël Chopin

Monash UniversityORCID 0000-0001-8812-2763Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Organism:mouse· 2 Assay:ATAC-seq· 1 Assay:ChIP-seq· 1

Frequent Co-Authors

Adele A. BarugahareiD· 1 shared Ben LeiseriD· 1 shared Brendan E. RussiD· 1 shared Daniel ThieleiD· 1 shared Haifeng C. XuiD· 1 shared Ioanna Gemund· 1 shared Jasmina HoffeiD· 1 shared Jasmine Li· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperImmunology

Adele A. BarugahareORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

ImmunologybioRxivPreprintJul 27, 2025

SATB1 maintains naive-like identity in antiviral CD8⁺ T cells by limiting chromatin remodelling at effector gene loci.

Jason K.C. Lee, Adele A. Barugahare, Ioanna Gemund…·Stephen T. Turner

This study identifies SATB1 as a regulator that maintains naive CD8+ T cell identity by restricting chromatin remodelling at effector gene loci, preventing premature differentiation during viral infection.

DOI 10.1101/2025.07.27.667094

mousescRNA-seq

𝕏 PostBluesky

Cell BiologyFrontiers in ImmunologyPeer-reviewedMay 29, 2025

Transcriptional Regulatory Logic Orchestrating Lymphoid and Myeloid Cell Fate Decisions

Rasoul Godini, Jingjing Yan, Michaël Chopin

The paper identifies lineage-specific gene regulatory circuits controlling B cells, T cells, ILCs, and DCs using WGCNA and TF expression patterns.

5 citations

bulk RNA-seqstatistical model

𝕏 PostBluesky

ImmunologybioRxivPreprintJan 11, 2024

BATF controls IFN I production via DC-SCRIPT in plasmacytoid dendritic cells

Shafaqat Ali, Ritu Mann‐Nüttel, Marcel Marson…·Stefanie Scheu

The paper shows BATF suppresses IFN I production in pDCs via DC-SCRIPT, revealing a negative feedback loop in antiviral immunity.

1 citation

mouseATAC-seq

𝕏 PostBluesky