Author

Kasi Vegesana

St. Jude Children's Research HospitalORCID 0000-0001-8847-3774Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Kasi Vegesana1 paper

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Research Focus:cell type annotation· 3 Organism:human· 3 Assay:scRNA-seq· 3 Approach:deep learning· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Anastasia A. MinervinaiD· 3 shared Paul Glyndwr ThomasiD· 3 shared Mikhail V. PogorelyyiD· 2 shared Philip H BradleyiD· 2 shared Aditya H. GauriD· 1 shared Alexandra–Chloé VillaniiD· 1 shared Allison M. KirkiD· 1 shared Amanda ColeiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersImmunology

Anastasia A. MinervinaORCID

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3 papers

Recent·Most cited

ImmunologyPLoS Computational BiologyPeer-reviewedJan 16, 2026

TCR2HLA: calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes

Koshlan Mayer-Blackwell, Anastasia A. Minervina, Mikhail V. Pogorelyy…·Andrew J. Fiore-Gartland

TCR2HLA infers HLA genotypes from TCR repertoires, enabling identification of immunologically relevant metaclonotypes and discovery of HLA-associated TCRs.

3 citationstop 5%

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ImmunologyNature MethodsPeer-reviewedNov 24, 2025

TIRTL-seq: Deep, quantitative, and affordable paired TCR repertoire sequencing

Mikhail V. Pogorelyy, Allison M. Kirk, Samir Adhikari…·Paul Glyndwr Thomas

TIRTL-seq provides a scalable, cost-effective method for paired TCR repertoire sequencing, enabling accurate identification of TCR chain pairings and clonotype dynamics in large cohorts.

43 citationstop 1%

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ImmunologybioRxivPreprintMay 31, 2025

Diverse modes of T cell receptor sequence convergence define unique functional and cellular phenotypes

Stefan Schattgen, Kasi Vegesana, William D. Hazelton…·Philip H Bradley

The paper analyzes 6 million T cells from 91 studies to identify TCR sequence convergence patterns and their association with functional and cellular T cell phenotypes.

4 citations

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