Author

Engy Mohamed Taha Nasr

University of FreiburgORCID 0000-0001-9047-4215Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Ecology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:database / resource· 2 Approach:experimental assay· 2 Research Focus:benchmarking· 1 Research Focus:cell signaling & trafficking· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:ecology & biodiversity· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Bérénice BatutiD· 3 shared Björn Andreas GrüningiD· 2 shared Paul F. ZierepiD· 2 shared Pierre AmatoiD· 2 shared Raphaëlle PéguilhaniD· 2 shared Andrew StubbsiD· 1 shared Anna HengeriD· 1 shared Anshu BhardwajiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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3 shared papersBioinformatics

Bérénice BatutORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsCommunications BiologyPeer-reviewedOct 29, 2026

Microbiology Galaxy Lab: The first community-driven gateway for reproducible and FAIR analysis of microbial data

Engy Mohamed Taha Nasr, Nikolaos Pechlivanis, Nikolaos Strepis…·Bérénice Batut

The paper introduces the Microbiology Galaxy Lab, a community-driven platform for reproducible and FAIR microbial data analysis, offering tools for various omics data types and use cases.

5 citationstop 1%

metagenomicsexperimental assay

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GenomicsGigaSciencePeer-reviewedJan 1, 2025

PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking

Engy Mohamed Taha Nasr, Anna Henger, Björn Andreas Grüning…·Bérénice Batut

PathoGFAIR provides FAIR and adaptable metagenomics workflows for detecting and tracking pathogens from Nanopore sequencing data, achieving species-level detection in most tested samples.

5 citations

metagenomicsexperimental assay

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EcologybioRxivPreprintDec 14, 2023

Clouds, oases for airborne microbes - Differential metagenomics/ metatranscriptomics analyses of cloudy and clear atmospheric situations

Raphaëlle Péguilhan, Florent Rossi, Muriel Joly…·Pierre Amato

The paper compares metagenomics/metatranscriptomics of cloudy and clear atmospheric conditions, showing clouds activate microbial metabolic functions similar to soil rewetting.

2 citations

metagenomicsmetabolomics

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