Author

Amber Kim

The Wistar InstituteORCID 0000-0001-9050-5528Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 2 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Approach:machine learning (classical)· 1 Organism:plant (other)· 1 Research Focus:protein design· 1

Frequent Co-Authors

Colby J. AgostinoiD· 2 shared Daniel W. KulpiD· 2 shared Jesper PalleseniD· 2 shared Kelly Bayruns· 2 shared Madison E. McCanna· 2 shared Zi Jie LiniD· 2 shared Alana Huynh· 1 shared Amelia EscolanoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersImmunology

Colby J. AgostinoORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

ImmunologyProceedings of the National Academy of SciencesPeer-reviewedApr 29, 2026

Deep Mining of the Human Antibody Repertoire Identifies Frequent and Genetically Diverse CDRH3 Topologies Targetable by Vaccination

Rumi Habib, Shahlo O. Solieva, Zi Jie Lin…·Daniel W. Kulp

The paper identifies frequent and genetically diverse CDRH3 topologies in the human antibody repertoire that can be targeted by vaccination to elicit broadly neutralizing antibodies.

8 citationstop 3%

humanproteomics

𝕏 PostBluesky

BiophysicsProceedings of the National Academy of SciencesPeer-reviewedDec 3, 2025

Machine learning enables de novo multi-epitope design of plasmodium falciparum circumsporozoite protein to target trimeric L9 antibody

Andrew Nelson, Samuel E. Garfinkle, Zi Jie Lin…·Jesper Pallesen

The paper designs a multi-epitope immunogen for malaria using machine learning, demonstrating its ability to bind and orient three copies of the L9 antibody.

2 citations

plant (other)protein structure

𝕏 PostBluesky