Author
Andrew H. Song
Broad InstituteORCID 0000-0001-9356-9156Unclaimed ORCID profile · follow to get notified of new preprints
Biology Disciplines
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2024-2026 · peak 3/yrCo-Author Collaboration Network
10 top collaborators · 45 mutual co-author links6 papers
Recent·Most cited
- PathologybioRxivPreprint
Scalable 3D cell-interaction analysis via supercell graphs for prostate cancer risk stratification
Yujie Zhao, Sarah S. L. Chow, Renao Yan…·Jonathan T.C. Liu
SCALE3D improves prostate cancer risk prediction by analyzing 3D cell interactions through supercell graphs, outperforming traditional features and reducing computational demands.
DOI 10.64898/2026.07.07.736891 - PathologyJournal of The Royal Society InterfacePeer-reviewed
Histology-guided 3D virtual staining of microCT-imaged lung tissue via deep learning
Cristina Almagro-Pérez, Niccolò Peruzzi, Csaba Galambos…·Goran Lovrić
This paper develops a deep learning method to virtually stain 3D microCT lung tissue, mimicking histological stains and enabling 3D pathology analysis.
- PathologybioRxivPreprint
Deep-learning triage of 3D pathology datasets for comprehensive and efficient pathologist assessments
Gan Gao, Renao Yan, Andrew H. Song…·Jonathan T.C. Liu
CARP3D uses deep learning to prioritize high-risk 2D sections in 3D pathology data, improving disease detection while reducing pathologist workload.
6 citations - BioinformaticsbioRxivPreprint
Deep Learning-based Modeling for Preclinical Drug Safety Assessment
Guillaume Jaume, Simone de Brot, Andrew H. Song…·Faisal Mahmood
This paper introduces TRACE, a deep learning model for automated liver histopathology assessment in preclinical drug safety, achieving higher concordance than pathologists in lesion scoring and dose-response analysis.
- BioinformaticsbioRxivPreprint
AI-driven Discovery of Morphomolecular Signatures in Toxicology
Guillaume Jaume, Thomas Peeters, Andrew H. Song…·Faisal Mahmood
This paper introduces GEESE, an AI model that imputes morphomolecular signatures in toxicology data, linking gene expression changes to drug-induced liver injuries.
4 citations