Wei Du

MMM assesses germplasm collection quality by quantifying Mendelian mismatches, identifying duplicates, and revealing structural patterns in apple and sweet cherry datasets.

STAnalyzer automates spatial transcriptomics analysis through a multi-agent framework, enabling end-to-end processing and hypothesis generation with transparency and robustness.

The paper introduces a method to reconstruct genome-scale metabolic networks with local reactions and transcriptional regulation, achieving accurate phenotype predictions in multiple organisms.

The paper expands DNA methylation data from TCGA using EAGLING, identifies triple-evidenced genes across 13 cancers, and reveals enriched pathways with potential therapeutic value.