Gaoyang Li

This paper benchmarks 40 single-cell multi-modal integration algorithms across paired, unpaired, and mosaic datasets to evaluate usability, accuracy, and robustness.

gcSV is a structural variant detection framework that improves accuracy and yield across long, hybrid, and short-read data, identifying over 93,000 novel SVs.

The paper introduces a method to reconstruct genome-scale metabolic networks with local reactions and transcriptional regulation, achieving accurate phenotype predictions in multiple organisms.

WITOD analyzes within-taxon diversity in microbiomes by processing OTU sequences to reveal genetic polymorphism and its potential impact on traits like disease.

deSAMBA classifies metagenomics long reads quickly and accurately using a sparse approximate match block-based algorithm, outperforming existing tools.