Author

Agata Muszyńska

Jagiellonian UniversityORCID 0000-0001-9919-1465Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genomics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Paweł P. ŁabajiD· 3 shared Agata SzlagaiD· 1 shared Alexander BlumeiD· 1 shared Alicia AlonsoiD· 1 shared Altuna AkaliniD· 1 shared Amanda RaineiD· 1 shared Anders LundmarkiD· 1 shared Andreas SchereriD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Paweł P. ŁabajORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsFrontiers in MicrobiologyPeer-reviewedJun 19, 2024

Gut Microbiome Dynamics and Predictive Value in Hospitalized COVID-19 Patients: A Comparative Analysis of Shallow and Deep Shotgun Sequencing

Katarzyna Kopera, Tomasz Gromowski, Witold Wydmański…·Tomasz Kościółek

This study examines gut microbiome changes in hospitalized COVID-19 patients using shallow and deep shotgun sequencing to assess their predictive value for clinical outcomes.

9 citations

humanmetagenomics

𝕏 PostBluesky

NeurosciencebioRxivPreprintApr 28, 2023

Mitochondrial fitness influences neuronal excitability of dopaminergic neurons from patients with idiopathic form of Parkinson's disease

Paula Chlebanowska, Agata Szlaga, Anna Tejchman…·Marcin Majka

The paper investigates mitochondrial dysfunction in iPSC-derived dopaminergic neurons from idiopathic Parkinson's disease patients, finding reduced mitochondrial fitness and ATP availability linked to decreased neuronal excitability.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintDec 14, 2020

The SEQC2 Epigenomics Quality Control (EpiQC) Study: Comprehensive Characterization of Epigenetic Methods, Reproducibility, and Quantification

Jonathan Foox, Jessica Nordlund, Claudia Lalancette…·Christopher E. Mason

The paper evaluates epigenetic methods using reference materials, finding high concordance between assays and differences in performance across platforms.

2 citations

humanDNA methylation

𝕏 PostBluesky