Author

Sébastien J. Dumas

InsermORCID 0000-0001-9958-3485Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:metabolomics· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:batch correction / integration· 1

Frequent Co-Authors

Ahmed Essam MahfouziD· 2 shared Benedetta ManzatoiD· 2 shared Gangqi WangiD· 2 shared Rosalie G. J. RietjensiD· 2 shared Ton J. RabelinkiD· 2 shared Anton Jan van ZonneveldiD· 1 shared Benjamin D. HumphreysiD· 1 shared Bernard M. van den BergiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Ahmed Essam MahfouzORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

BioinformaticsCell Reports MethodsPeer-reviewedSep 1, 2026

Image-guided alignment of consecutive multi-modal tissue slides

Benedetta Manzato, Claudio Novella-Rausell, Gangqi Wang…·Ahmed Essam Mahfouz

COAST aligns consecutive tissue sections using only spatial images, enabling unified multi-modal molecular data analysis without molecular markers or annotations.

DOI 10.1016/j.crmeth.2026.101575

mousespatial transcriptomics

𝕏 PostBluesky

BiochemistryJournal of the American Society of NephrologyPeer-reviewedAug 3, 2026

Spatial metabolomics reveals persistent localized niche-specific metabolic failure in kidneys following ischemia-reperfusion injury

Rosalie G. J. Rietjens, Benedetta Manzato, Yuheng Liao…·Ton J. Rabelink

The paper uses spatial metabolomics and transcriptomics to identify persistent metabolic failure in kidney niches after ischemia-reperfusion injury, highlighting mitochondrial dysfunction in otherwise healthy areas.

DOI 10.1681/asn.0000001216

humanspatial transcriptomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJan 14, 2025

Cell Type-Specific and Diabetic Kidney Disease-Associated Expression of Long Non-Coding RNAs in Human Kidneys

Juliette A. de Klerk, Roderick C. Slieker, Wilson C Parker…·Roel Bijkerk

The paper identifies cell type-specific lncRNAs in human kidneys and finds TARID, a podocyte-specific lncRNA, is upregulated in diabetic kidney disease and critical for actin cytoskeleton reorganization.

DOI 10.1101/2025.01.14.632910

humanscRNA-seq

𝕏 PostBluesky