Author

Bernard M. van den Berg

Leiden University Medical CenterORCID 0000-0002-5726-5777Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Biochemistry· 2 Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Assay:metabolomics· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:spatial domain detection· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Ton J. RabelinkiD· 4 shared Gangqi WangiD· 3 shared Martin A. GieraiD· 3 shared Ahmed Essam MahfouziD· 1 shared Anne-Els van de Logt· 1 shared Anouk van der Velden· 1 shared Arthur LiesziD· 1 shared Baihua WuiD· 1 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersBiochemistry

Ton J. RabelinkORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

BiochemistryJournal of the American Society of NephrologyPeer-reviewedAug 3, 2026

Spatial metabolomics reveals persistent localized niche-specific metabolic failure in kidneys following ischemia-reperfusion injury

Rosalie G. J. Rietjens, Benedetta Manzato, Yuheng Liao…·Ton J. Rabelink

The paper uses spatial metabolomics and transcriptomics to identify persistent metabolic failure in kidney niches after ischemia-reperfusion injury, highlighting mitochondrial dysfunction in otherwise healthy areas.

DOI 10.1681/asn.0000001216

humanspatial transcriptomics

𝕏 PostBluesky

Cell BiologybioRxivPreprintJun 16, 2026

Same-section spatial metabolo-transcriptomics using Stereo-meta-seq reveals DHA-driven kidney maturation

Roan H van Scheppingen, Baihua Wu, Yumeng Zhang…·Gangqi Wang

This study introduces Stereo-meta-seq to integrate spatial metabolomics and transcriptomics in human kidney development, revealing DHA's role in proximal tubule maturation.

DOI 10.64898/2026.06.16.732541

humanspatial transcriptomics

𝕏 PostBluesky

BioinformaticsMolecular & Cellular ProteomicsPeer-reviewedMar 13, 2026

Glycoinformatic profiling of label-free intact heparan sulfate oligosaccharides

Marissa L. Maciej-Hulme, Jandi Kim, Elijah T. Roberts…·Johan van der Vlag

The paper develops a mass spectrometry-based glycoprofiling approach for native heparan sulfate oligosaccharides, revealing distinct HS profiles in kidney disease patients.

1 citation

humanproteomics

𝕏 PostBluesky

BiochemistryNature MetabolismPeer-reviewedAug 5, 2025

Spatial quantitative metabolomics enables identification of remote and sustained ipsilateral cortical metabolic reprogramming after stroke

Gangqi Wang, Bernard M. van den Berg, Sarantos Kostidis…·Ton J. Rabelink

This paper introduces a quantitative MSI workflow using 13C-labeled yeast extract to enable reliable spatial metabolomics, revealing metabolic changes in the ipsilateral cortex after stroke.

41 citationstop 1%

mousemetabolomics

𝕏 PostBluesky