Author

Baobao Song

Biogen (United States)ORCID 0000-0002-0062-2710Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:batch correction / integration· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Assay:multiome· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Baohong ZhangiD· 1 shared Dann Huh· 1 shared Fergal CaseyiD· 1 shared Guangyuan LiiD· 1 shared H. Leighton GrimesiD· 1 shared Haotian ZhangiD· 1 shared Harinder SinghiD· 1 shared Houlin YuiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperBioinformatics

Baohong ZhangORCID

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2 papers

Recent·Most cited

BioinformaticsJournal of Advance Research in Pharmacy & Biological SciencePeer-reviewedJan 19, 2026

SpaceSequest: A unified pipeline for spatial transcriptomics data analysis

Yu Henry Sun, Sarbottam Piya, Zhengyu Ouyang…·Baohong Zhang

SpaceSequest provides a unified pipeline for analyzing spatial transcriptomics data from multiple platforms, enabling standardized processing, analysis, and visualization.

2 citations

spatial transcriptomicsstatistical model

𝕏 PostBluesky

BioinformaticsNature CommunicationsPeer-reviewedJan 25, 2023

scTriangulate, a game-theory based framework for optimal solutions of uni- and multimodal single-cell data

Guangyuan Li, Baobao Song, Harinder Singh…·Nathan Salomonis

scTriangulate identifies high-confidence cell populations and modality-specific subtypes by combining clustering results from uni- and multimodal single-cell data using a game-theory framework.

12 citations

scRNA-seqmultiome

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