Baohong Zhang

The paper uses spatial transcriptomics to analyze cell-cell interactions in a cuprizone model, finding region-specific changes and partial translatability to multiple sclerosis lesions.

SpaceSequest provides a unified pipeline for analyzing spatial transcriptomics data from multiple platforms, enabling standardized processing, analysis, and visualization.

This paper uses long-read sequencing to characterize rAAV genomes and impurities, enabling better quality control in gene therapy production.

This study identifies focal adhesion pathway inhibition as a key mechanism enhancing macrophage phagocytosis and improving anti-CD20 monoclonal antibody therapy in aggressive lymphoma through high-throughput screening and high-content imaging.

iSCALE predicts super-resolution gene expression and annotates tissue architecture in large tissues, revealing features missed by conventional spatial transcriptomics.

CompBioAgent provides a user-friendly tool powered by LLMs to explore scRNA-seq data through natural language queries and visualizations.

xOmicsShiny is an R Shiny application that enables cross-omics data analysis and pathway mapping with visualization and analytical tools.

ScaleSC provides a GPU-accelerated single-cell RNA-seq analysis pipeline with 20x speedup and scalability for large datasets.

OmicsView provides an interactive platform for analyzing omics data, enabling researchers to explore disease pathology and identify biomarkers using preprocessed datasets.

CellDepot provides a web platform for uploading, querying, and comparing scRNA-seq datasets with visualization tools to support data sharing and analysis.

CellMap infers cell type profiles in bulk RNA-seq data from iPSC-derived cell lines using reference single-cell datasets.

Quickomics is an R Shiny tool for interactive exploration of omics data analysis results, offering customizable modules and visualization options.

CHOmics is a web-based tool for analyzing and visualizing multi-omics data from CHO cell lines, offering integrated analysis, customization, and visualization features.

Cellxgene VIP enhances single cell data analysis by providing interactive visualization, advanced analytical tools, and multi-modal data integration for scRNA-seq, spatial transcriptomics, and multiome datasets.

figureComposer is a web-based tool that allows users to create multi-panel publication-quality figures without programming skills.

The paper identifies in vivo eQTL interactions with cytokine levels in a lupus trial, finding novel regulatory mechanisms and potential therapeutic targets.

The paper introduces canvasXpress, an interactive visualization toolkit for scientific and genomics data, highlighting its features and real-world applications in bioinformatics.

QuickRNASeq provides a pipeline for RNA-seq analysis and interactive visualization of results, automating tools to generate user-friendly reports.

The paper characterizes a PRE-1 element in pigs, showing its structural and evolutionary similarities to primate Alu elements, suggesting a close evolutionary relationship between suidae and primates.