Author

Stacy J. Caillier

University of California, San FranciscoORCID 0000-0002-0218-2077Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:CITE-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Adam SantanielloiD· 3 shared Adam RenscheniD· 2 shared B. A. C. CreeiD· 2 shared Danillo G. AugustoiD· 2 shared Jill A. HollenbachiD· 2 shared Jorge R. OksenbergiD· 2 shared Kerry Kizer· 2 shared Ahmed AbdelhakiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersImmunology

Adam SantanielloORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

ImmunologyNature ImmunologyPeer-reviewedFeb 5, 2026

✦ In-depth digest

Antigen-specificity of clonally-enriched CD8+ T cells in multiple sclerosis

Fumie Hayashi, Kristen Mittl, Ravi Dandekar…·Joseph J. Sabatino

Paired CSF and blood scRNA/TCR-seq in treatment-naive MS shows a small set of expanded, cytotoxic CSF-enriched CD8+ clonotypes, two of which recognize EBV epitopes.

31 citationstop 1%

humanscRNA-seq

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BioinformaticsGenome biologyPeer-reviewedOct 17, 2024

MHConstructor: A high-throughput, haplotype-informed solution to the MHC assembly challenge

Kristen J. Wade, Rayo Suseno, Kerry Kizer…·Jill A. Hollenbach

MHConstructor provides a haplotype-informed, high-throughput pipeline for de novo MHC assembly from short read data, improving upon reference-based methods.

2 citations

humanwhole-genome sequencing

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GeneticsCellPeer-reviewedOct 18, 2018

Low frequency and rare coding variation contributes to multiple sclerosis risk

Mitja Mitrovič, Nikolaos A. Patsopoulos, Ashley Harris Beecham…·Hakon H. Hakonarson

The paper identifies low-frequency coding variants contributing to multiple sclerosis risk using a large case-control study.

173 citationstop 1%

humanGWAS summary statistics

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