Author

Kerry Kizer

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:CITE-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Adam RenscheniD· 2 shared Adam SantanielloiD· 2 shared Danillo G. AugustoiD· 2 shared Jill A. HollenbachiD· 2 shared Jorge R. OksenbergiD· 2 shared Stacy J. CaillieriD· 2 shared Ahmed AbdelhakiD· 1 shared Akshaya RameshiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersImmunology

Adam RenschenORCID

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Author profile →

2 papers

Recent·Most cited

Antigen-specificity of clonally-enriched CD8+ T cells in multiple sclerosis

Fumie Hayashi, Kristen Mittl, Ravi Dandekar, Josiah Gerdts, Ebtesam Hassan, Ryan D. Schubert, Lindsay Oshiro, Rita P. Loudermilk, Ariele L. Greenfield, Danillo G. Augusto, Gregory C Havton, Shriya Anumarlu, Arhan Surapaneni, Akshaya Ramesh, Edwina B. Tran, , Joseph J. Sabatino

Paired CSF and blood scRNA/TCR-seq in treatment-naive MS shows a small set of expanded, cytotoxic CSF-enriched CD8+ clonotypes, two of which recognize EBV epitopes.

Nature Immunology · Feb 5, 2026Peer-reviewedImmunology✦ In-depth digest

MHConstructor: A high-throughput, haplotype-informed solution to the MHC assembly challenge

Kristen J. Wade, Rayo Suseno, Kerry Kizer, Jacqueline P. Williams, Juliano André Boquett, Stacy J. Caillier, Nicholas R. Pollock, Adam Renschen, Adam Santaniello, Jorge R. Oksenberg, Paul J. Norman, Danillo G. Augusto, Jill A. Hollenbach

MHConstructor provides a haplotype-informed, high-throughput pipeline for de novo MHC assembly from short read data, improving upon reference-based methods.

Genome biology · Oct 17, 2024Peer-reviewedBioinformatics