Vladimı́r Beneš

The paper uses single molecule footprinting to study transcription factor co-occupancy and cooperativity in mouse cis-regulatory elements, finding that high DNA co-occupancy can occur without direct physical interaction.

This study shows that aberrant replication licensing factors drive Copy Number Gains (CNGs) in fission yeast and mammalian cells, linking re-replication to cancer and evolution.

The paper uses nanopore sequencing to assemble Drechmeria coniospora genomes, revealing chromosome plasticity and highlighting the limitations of current long-read methods.

The paper identifies CD44 as a marker and regulator of haematopoietic stem cell development through single-cell transcriptomics and functional experiments.

This paper introduces scTRIP, a method to detect structural variations in single cells, revealing new SV classes and mutational processes in cancer samples.

The paper identifies a subset of pre-existent sox10+ cardiomyocytes in adult zebrafish that expand after injury and are crucial for cardiac regeneration.